Regardless of the country or region of the world, poultry eggs are one of the most important components of the human diet. Nutritional value is derived from them, but chicken eggs can be contaminated with POPs. The aim of the study was to compare the impact of different types of chicken husbandry system on bioaccumulation of selected POPs. The HRGC/HRMS method was used for determination of 58 congeners of chlorinated and brominated halogenated aromatic hydrocarbons. The influence of the farm rearing system on concentration and congener profile was seen for most groups of tested contaminants, of which the eggs were a source. Human exposure to dioxins and dioxin-like compounds as a result of consumption of contaminated eggs should be a subject of concern. The occurrence of PCDD/Fs, PCBs, PBDEs, and PBDD/Fs in commonly consumed foodstuffs such as eggs supports the need for further research on environmental pollutants and for determination of exposure as the result of their occurrence in different food categories.